PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00008.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 226aa    MW: 26430.7 Da    PI: 5.4323
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00008.1_g00002.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.33.8e-33111422127
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratk..sgy 82 
                              ppGfrF Ptd+e++++yL + ++g+ ++   +i+ +d+y+ +P ++p +   +++ee+ +yfF++r++k ++g+r+ r+t+  +gy
  Sme2.5_00008.1_g00002.1  11 PPGFRFCPTDQEILQDYLLRYLTGQFIPP-GIIRPFDVYERNPYHIPvTtaGIETEEQFTYFFTERARKWEKGSRTDRVTRdrKGY 95 
                              9*************************999.89***************4333444455566******************998779** PP

                      NAM  83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyr 127
                              Wk++ k ++v++++g+  g k tLv+y  +  +++  kt+W+mhe+ 
  Sme2.5_00008.1_g00002.1  96 WKSSSKITSVCAENGSYLGKKSTLVYYvkNSGNKEDIKTNWIMHEFL 142
                              ***************************7533455558********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-369171IPR003441NAC domain
PROSITE profilePS5100538.37510173IPR003441NAC domain
PfamPF023655.9E-2011141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MSGEEWKKQI PPGFRFCPTD QEILQDYLLR YLTGQFIPPG IIRPFDVYER NPYHIPVTTA  60
GIETEEQFTY FFTERARKWE KGSRTDRVTR DRKGYWKSSS KITSVCAENG SYLGKKSTLV  120
YYVKNSGNKE DIKTNWIMHE FLIAKYLVSA SSSSAQPEDE HYEDLVVCRI YENERYKNQG  180
RTGERMHLIN YLIGPKPEED ILDLWDILSV PPPNDSFEDY LQSPGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-24917414169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016576349.13e-62PREDICTED: NAC domain-containing protein 83-like
TrEMBLK4C8323e-53K4C832_SOLLC; Uncharacterized protein
STRINGSolyc06g068580.1.19e-53(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1616255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.28e-23NAC domain containing protein 47